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Totemtimers are locked the frame seems invisible
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If this means the parented eePanel dissapears when the addon frame is locked, then the eePanel isn't parented to the right frame. It's probably parented to a "guide frame" which is used to position the frame, not the frame itself. Lock the addon, and use the script in the eePanels2 wiki to get the real frame name.
If you mean the script in the eePanels2 wiki displays 'nil' when the addon is locked, it's probably still because they're using a guide frame when it's unlocked, but the actual frames the addon uses isn't named. If it's not named, you can't parent/anchor to it. If the addon doesn't create multiple frames (like elk buff bars or something), you should ask the addon author to name the frame so it can be accessed.
http://www.wowace.com/wiki/EePanels2